Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs62415861 | chr6:56916081 | G/T | 3.41E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs62415862 | chr6:56922749 | C/T | 3.69E-6 | 402 | 15.25 | 15.3 | 7.8 | KM Plot |
| LGG | rs62415863 | chr6:56922877 | G/A | 3.69E-6 | 402 | 15.25 | 15.3 | 7.8 | KM Plot |
| LGG | rs62415864 | chr6:56925298 | G/A | 3.88E-6 | 401 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs62415865 | chr6:56945165 | G/A | 3.66E-6 | 403 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs62415879 | chr6:56953447 | C/T | 3.25E-6 | 406 | 15.25 | 15.3 | 7.8 | KM Plot |
| LGG | rs62415880 | chr6:56965021 | A/G | 3.69E-6 | 402 | 15.25 | 15.3 | 7.8 | KM Plot |
| LGG | rs62415885 | chr6:56985003 | G/A | 3.12E-6 | 407 | 15.33 | 15.3 | 7.8 | KM Plot |
| LGG | rs62415928 | chr6:57046405 | C/T | 3.43E-6 | 403 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs62417430 | chr6:56903193 | G/C | 3.61E-6 | 402 | 14.95 | 15.93 | 7.8 | KM Plot |
| LGG | rs62471511 | chr7:64922407 | G/T | 4.32E-7 | 405 | 15.57 | 15.07 | 2.27 | KM Plot |
| LGG | rs62471513 | chr7:64924148 | G/A | 1.05E-7 | 403 | 15.45 | 15.2 | 2.27 | KM Plot |
| LGG | rs62471516 | chr7:64926192 | A/G | 1.06E-7 | 402 | 15.57 | 15.2 | 2.27 | KM Plot |
| LGG | rs62471518 | chr7:64927346 | G/A | 1.06E-7 | 402 | 15.57 | 15.2 | 2.27 | KM Plot |
| LGG | rs62471519 | chr7:64928036 | G/C | 1.06E-7 | 402 | 15.57 | 15.2 | 2.27 | KM Plot |